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Application Penetration Testing: Steps, Methods, & Tools

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Modern-day application penetration testing spans from traditional web and mobile application
penetration testing to emerging IoT and blockchain penetration testing.

Application Penetration Testing
Application Penetration Testing: Steps, Methods, & Tools
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What Is Web Application Penetration Testing and Where it Used?

Application penetration testing is a simulated attack on a computer system or network to identify vulnerabilities that could be exploited by malicious actors. In the context of web applications, this involves attempting to breach the system's security measures to gain unauthorized access or control.

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Application penetration testing is a descendant of the Ethical Hacking industry that emerged in late nineties. Both aimed to detect security vulnerabilities and verify security, integrity and availability of computer systems, they considerably differ. At the nostalgic epoch of Ethical Hacking, organizations were merely curious whether and how quickly their IT bastions can get hacked, oftentimes taking the findings with humor and carelessness. Very few penetration testing methodologies or security certifications existed at this point of time, triggering some confusion around the nature of the service.

Differently from network penetration test, the application penetration test is mostly focused on the Application Layer of TCP/IP model. Application penetration test has a multitude of important features and distinguishing properties that we will elaborate below in ample details.

Contrasted to web security scanning or automated penetration testing, application penetration test implies intensive human testing and skillful labor. Modern web and mobile applications contain a great wealth of intricate security and privacy vulnerabilities that cannot be detected with an automated vulnerability scanner. Penetration testing for web applications is not cheap, however, the outcomes definitely worth the investment if planned and executed correctly.

At ImmuniWeb, simple and medium complexity testing tasks are intelligently automated by AI and deep learning algorithms, preserving their highest reliability and quality, and resultingly delivering an unbeatable price/quality ratio to our clientele compared to traditional application penetration testing.

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Why Web Application Pen Tests are Performed?

Business executives and risk professionals may reasonably question about the ultimate goals of application pen testing, and notably how to transform them into some palpable value for organizations from a financial perspective.

A properly planned and executed penetration test brings the following advantages.

Assurance of Integrity and Compliance

It is pivotal to verify that your data is properly protected to ensure a well-informed decision-making process and budgeting. Most of the enacted data protection laws and regulations likewise impose regular penetration testing by independent third parties.

Cyber Risk Reduction

Skyrocketing data breaches oftentimes happen because of careless or negligent cybersecurity management, ignorance of novel risks, threats and vulnerabilities.

Legal and Financial Liability Decrease

Western courts, both in Common and Civil law systems, consider such precautions as penetration testing and related processes when assessing penalties in data breach litigation, now spanning from penny individual complaints to multi-billion class action lawsuits.

Cyber Insurance Reduction

Currently trendy cybersecurity insurances scrutinize your penetration testing processes when evaluation your eligibility to get coverage in case of a security incident, data breach or leak.

Cybersecurity Strategy Verification

Penetration test is tenable and empiric manner to ascertain that the money you invest into your corporate cybersecurity and compliance strategies are spent efficiently and effectively, generating tangible value for the shareholders.


That is to say, continuous penetration testing in 2024 shall definitely be regarded thought the prism of a sustainable investment and not a cost.

Application Penetration Testing Scope

Definition of a pentest scope is crucial to ensure eventual success of the penetration test. Countless organizations are hacked every month because of incomplete or wrongly prioritized scope of testing. You cannot protect what you don’t know, however, shrewd attackers are well proficient to leverage passive and active reconnaissance techniques and OSINT (Open-Source Intelligence) to ferret out forgotten, abandoned or test systems left without protection. Such shadow and legacy systems are a low-hanging fruit for cybercriminals.

Holistic visibility of your digital and IT assets exposed to the Internet is paramount prior to commencing web application pentesting.

The list can include:

  • All types of websites (e.g. opensource CMS such as WordPress or proprietary MS SharePoint)
  • All types of web applications including e-commerce, e-banking and e-voting applications
  • All types of web application residing in the cloud, or provided as a SaaS or PaaS
  • All types of HTTP-based web services, microservices, REST and SOAP APIs
  • All types of mobile applications, including e-payment and fintech apps
  • All types of HTTP-based IoT applications and microservices
  • Distributed applications (blockchain) and smart contracts
At ImmuniWeb, we offer Attack Surface Management (ASM) service to illuminate your external attack surface and enable a well-informed, threat-aware and risk-based application penetration testing, proportional to your needs, existing risks and available budget.

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Application Penetration Testing Vulnerabilities

Traditionally, OWASP Top 10 is a de facto standard for web app penetration testing, encompassing the following classes of web application vulnerabilities:

Mobile applications have a similar ranking by OWASP Mobile Top 10 project. It is commonly used for mobile application penetration testing of iOS and Android apps, purported to detect the following categories of mobile security weaknesses:

  • M1: Improper Credential Usage
  • M2: Inadequate Supply Chain Security
  • M3: Insecure Authentication/Authorization
  • M4: Insufficient Input/Output Validation
  • M5: Insecure Communication
  • M6: Inadequate Privacy Controls
  • M7: Insufficient Binary Protections
  • M8: Security Misconfiguration
  • M9: Insecure Data Storage
  • M10: Insufficient Cryptography

Human element of application security pen testing ensures that the most untrivial combinations and variations of the aforementioned security and privacy issues will be spotted.

At ImmuniWeb, we go far beyond foundational OWASP Top 10, and cover SANS Top 25 and PCI DSS 6.5.1 – 6.5.10 items by combining our award-wining AI technology with scalable and rapid manual penetration testing. Importantly, we also meticulously perform all tests and security checks from OWASP Testing Guide (OTGv4) and OWASP API Top 10.

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Application Penetration Testing Methodologies

Traditional network penetration testing methodologies, also applicable to application penetration testing, can be depicted by the following:

White Box Penetration Testing

The attackers have virtually unlimited access to the tested systems, including source code and documentation. White box probably provides the most comprehensive security review, however, is predictably time-consuming and hence expensive.

Grey Box Penetration Testing

The attackers have a restrained access to the tested systems, usually no source code is available. Grey box lays somewhere in between, and statistically, is probably the most suitable and harmonized approach for most of use cases.

Black Box Penetration Testing

The attackers have no technical information about the targeted systems whatsoever, generally just a company name and expected outcomes (e.g., take control over ERP system) are provided as an input. Black box is the closest one to reality, supplying actionable outcomes as if true cybercriminals are proof testing their malicious skills.


Similarly, web application pentesting can be internal or external. The internal one implies that the penetration testers are located at the premises of their client to access internal web applications and pre-production web systems.

To reduce the associated costs, at ImmuniWeb we offer our customers a Virtual Application (VA) technology to securely test their internal web applications and APIs from remote. You can specify any threat-aware or risk-specific testing scenario directly on ImmuniWeb AI Platform when creating a new penetration testing project.

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Recent development of security penetration testing brings some innovative approaches to application iot penetration testing techniques. Given the growing complexity and variability of modern threat landscape, it is essential to elaborate a risk-based testing approach, covering specific threat actors and intrusion techniques. For the purposes of such threat-aware penetration testing the following penetration testing teams are used:

Red Team

Red Team is formed of several skilled penetration testers. Their core mission is to develop and deploy a well-though intrusion scenario that a specific group of cybercriminals will likely try in case of a targeted attack or Advanced Persistent Threat (APT).

Blue Team

Contrariwise, Blue Team is composed of security analysts in charge of detecting and stopping intrusions in real time. When the latter is uninformed about upcoming activities of the Red Team, such methodology is sometimes called double-blind penetration testing. This type of testing helps better understand whether organization is ready to apprehend foreseeable cyber-attacks in timely, efficient and effective manner.

Application Penetration Testing Standards and Frameworks

Nowadays, web application pen test usually includes several standards and frameworks, ranging from open source OSTTM (Open-Source Security Testing Methodology Manual) to industry-specific ones such as PCI DSS penetration testing guidelines.

Most of them overlap or contain similar provisions described in a semantically different manner. Therefore, there is no compelling need to converge and aggregate all available standards, instead, combining a couple of them in a coherent, consistent and adequate manner is predisposing to ensure holistic testing and comprehensive vulnerability coverage.

At ImmuniWeb, we leverage the following international standards and recognized pentesting frameworks to ensure the highest quality of our application penetration testing:

Keep in mind, however, that from a practical viewpoint, application penetration testing standard is not that decisive as its coherent and comprehensive execution.

For these reasons, at ImmuniWeb, we also develop and continuously improve our own AI-driven methodologies of penetration testing tailored to rapidly detect what human may omit or overlook.

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Application Penetration Testing Stages

Predictability and consistency lay amid the foundational principles of application penetration test. Coherent execution of a penetration test can substantially add value to the deliverables and distill the noise from the crux.

Pentesting companies usually adhere to the following consequence of testing:

Planning and Threat Modelling

Planning is essential to ensure value creation by a penetration test. Risk-based and threat-aware testing scenarios of business-critical applications are designed to bring actionable reports tailored for genuine business needs.

Information Gartering and Reconnaissance

Once an attack scenario is prepared, penetration testers launch their automated tools and utilities to obtain as much information about the target as permitted within the scope. Usual restrictions lay within social engineering or physical intervention into organizational premises.

Automated Vulnerability Scanning and Testing

Scoping of the perimeter is normally followed by an automated scanning and fuzzing of target systems and applications for known security vulnerabilities and misconfigurations.

Manual Exploitation and Exploit Development

Once all the vulnerabilities and security flaws detectable by vulnerability scanners are found, penetration testers start expanding the vertical and horizontal scope of testing and pursue manual exploitation of the findings.

Remediation Guidelines Preparation

One of the most time-consuming stages given that the penetration test report shall be readable and easily-consumable by cybersecurity executives, software developers and security analysts on the client side, and bring simple and straightforward instructions on vulnerability remediation.

Remediation and Verification

The last stage is placed within the purview of the client, who is required to address the findings, ensure that recommendations have been properly implemented and documented for compliance and internal coordination purposes.


Manual application security pentesting equally provides such invaluable benefits as detailed remediation guidelines adopted for a particular organization, its internal processes and Software Development Lifecycle (SDLC). Furthermore, juxtaposed to automated application security scanning, penetration testing commonly has no false-positives and virtually no false-negatives condition to appropriately selected methodology and scope of the penetration test.

At the end of application penetration test, a detailed report is delivered to customer. This report gradually explains the methodologies and scope of the penetration test, itemizes detected security flaws and privacy issues, and then suggests viable recommendations for developers.

At ImmuniWeb, we greatly simplify and accelerate the aforementioned stages by leveraging our award-winning AI and Machine Learning technologies for intelligent automation of application penetration testing.

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Application Penetration Testing Tools

A mushrooming multitude of free and commercial pentesting tools are available on the Internet. To help pentesting community better understand, evaluate and measure application security risks, at ImmuniWeb we offer the following free tools within ImmuniWeb Community edition:

  • Website Security Test – free pentest tool to check all known security vulnerabilities from over 200 CMS and web frameworks, verify website PCI DSS and GDPR compliance.
  • Mobile App Security Test – free pentest tool to scan (SAST/DAST) your iOS or Android application for OWASP Mobile Top 10 and other security, privacy and encryption issues.
  • SSL Security Test – free pentest tool to audit your SSL/TLS encryption for cryptographic and implementation vulnerabilities or weaknesses, and validate whether it is compliant with NIST and HIPAA guidelines.
  • Cloud Security Test - free online tool to check unprotected or misconfigured cloud storage in the following public cloud service providers.
  • Email Security Test - free online tool to check misconfigured or vulnerable email servers
  • Website Privacy Test – free online test for cookie privacy, third-party assets and cookies policies.

These free pentesting tools are, however, fairly foundational and require substantial augmentation with human intelligence and more in-depth testing for the purpose of application penetration test.

At ImmuniWeb, we provide a free website security test that includes fingerprints of over 200 most popular web-based CMS and frameworks including WordPress, Drupal and Joomla, and over 150,000 their plugins, themes and extensions that often contain critical security vulnerabilities.

Learn more with ImmuniWeb Website Security Test
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Application Penetration Testing Certifications

Frequently, it is not a trivial task to evaluate someone’s penetration testing aptitude, skills and experience. Therefore, some organizations rely on mushrooming variety of penetration testing certifications when hiring security professionals.

The most prominent pentesting certifications in 2024 are:

It would be fundamentally inaccurate to hypothesize that penetration testing certificates always reflect someone’s practical knowledge. Certainly, they bring indisputable value, however, keep in mind that some of the very best White Hat hackers never got a certificate in the domain but rather teach newcomers at universities, online courses and cybersecurity conferences such as Black Hat or Defcon.

Thus, when evaluating your next security penetration testing candidate, consider the integrity of his or her skills, experience and most importantly candidate’s capacity to perceive business priorities and create value and harmony in your team.

Application Penetration Testing Pricing

Pricing for application penetration testing greatly varies among service providers. In 2024, penetration testing companies based in capitals of well-developed Western countries bill somewhere between $1800 to $3000 for a man-day of classic penetration test. Less developed areas in the US and Western Europe usually offer a more competitive rate spanning from $1200 to $1800 per man-day of testing and reporting.

Whilst in some developing countries prices may be comparatively lower, the quality, integrity and customer data protection are frequently impacted by price dumping tactics. For these reasons, it is advised to select penetration testing services providers with ISO 27001 certification, CREST accreditation and a valid traction in the industry.

The final price of a penetration test stems from overall project complexity, duration and special requirements. Usually the longer a project lasts, the more generous discount will be available. Occasionally, discounts for recurrent customers may play a non-neglectable role.

At ImmuniWeb, we leverage our award-winning AI technology for intelligent automation of simple, routine and repetitive application penetration testing tasks and processes.

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While highly complicated ones, that truly deserve human wisdom and ingenuity, are escalated to our certified penetration testers. Practical usage of Machine Learning and AI algorithms considerably reduces the required amount human time, provides unbeatable price and ensures highest quality and reliability of testing.

Application Penetration Testing Compliance

Nowadays, the aggrandizing spectrum of data protection laws and regulations unequivocally imposes or implies regular penetration testing for web and mobile applications.

For example, New York, the financial capital of the world, developed NYCRR 500 state law, expressly imposing obligatory application penetration testing. Developed by the New York State Department of Financial Services (NYSDFS), the NYCRR 500 is a set of regulations on financial institutions and insurance companies based in, or licensed to operate, in the state of New York. Violations of the law may trigger harsh financial penalties and other legal ramifications available under New York state law.

Therefore, in 2024, application penetration testing is not just a matter of best practice or corporate perception of digital risks but an absolutely requisite business process of a continuous and consistent nature.

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